SELECT 
  cscart_products_categories.product_id, 
  GROUP_CONCAT(
    IF(
      cscart_products_categories.link_type = "M", 
      CONCAT(
        cscart_products_categories.category_id, 
        "M"
      ), 
      cscart_products_categories.category_id
    )
  ) AS category_ids, 
  product_position_source.position AS position 
FROM 
  cscart_products_categories 
  INNER JOIN cscart_categories ON cscart_categories.category_id = cscart_products_categories.category_id 
  AND cscart_categories.storefront_id IN (0, 1) 
  AND (
    cscart_categories.usergroup_ids = '' 
    OR FIND_IN_SET(
      0, cscart_categories.usergroup_ids
    ) 
    OR FIND_IN_SET(
      1, cscart_categories.usergroup_ids
    )
  ) 
  AND cscart_categories.status IN ('A', 'H') 
  LEFT JOIN cscart_products_categories AS product_position_source ON cscart_products_categories.product_id = product_position_source.product_id 
  AND product_position_source.category_id = 521 
WHERE 
  cscart_products_categories.product_id IN (
    6748, 3226, 3218, 6754, 6745, 6752, 6712, 
    6738, 6703, 5032, 3346, 3342, 3345, 
    3341, 5035, 3340, 3344, 3339, 3347, 
    5936, 5378, 3338, 6290, 8813, 6741, 
    5028, 5030, 6739, 5029, 5194, 5957, 
    5040, 5036, 5461, 10221, 6702, 5034, 
    6753, 5042, 8784
  ) 
GROUP BY 
  cscart_products_categories.product_id

Query time 0.00294

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "207.81"
    },
    "grouping_operation": {
      "using_filesort": false,
      "nested_loop": [
        {
          "table": {
            "table_name": "cscart_products_categories",
            "access_type": "range",
            "possible_keys": [
              "PRIMARY",
              "pt"
            ],
            "key": "pt",
            "used_key_parts": [
              "product_id"
            ],
            "key_length": "3",
            "rows_examined_per_scan": 172,
            "rows_produced_per_join": 172,
            "filtered": "100.00",
            "index_condition": "(`softwarepirmam_hewadelivard_cscart_4`.`cscart_products_categories`.`product_id` in (6748,3226,3218,6754,6745,6752,6712,6738,6703,5032,3346,3342,3345,3341,5035,3340,3344,3339,3347,5936,5378,3338,6290,8813,6741,5028,5030,6739,5029,5194,5957,5040,5036,5461,10221,6702,5034,6753,5042,8784))",
            "cost_info": {
              "read_cost": "70.21",
              "eval_cost": "17.20",
              "prefix_cost": "87.41",
              "data_read_per_join": "2K"
            },
            "used_columns": [
              "product_id",
              "category_id",
              "link_type"
            ]
          }
        },
        {
          "table": {
            "table_name": "product_position_source",
            "access_type": "eq_ref",
            "possible_keys": [
              "PRIMARY",
              "pt"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "category_id",
              "product_id"
            ],
            "key_length": "6",
            "ref": [
              "const",
              "softwarepirmam_hewadelivard_cscart_4.cscart_products_categories.product_id"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 172,
            "filtered": "100.00",
            "cost_info": {
              "read_cost": "43.00",
              "eval_cost": "17.20",
              "prefix_cost": "147.61",
              "data_read_per_join": "2K"
            },
            "used_columns": [
              "product_id",
              "category_id",
              "position"
            ]
          }
        },
        {
          "table": {
            "table_name": "cscart_categories",
            "access_type": "eq_ref",
            "possible_keys": [
              "PRIMARY",
              "c_status",
              "p_category_id"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "category_id"
            ],
            "key_length": "3",
            "ref": [
              "softwarepirmam_hewadelivard_cscart_4.cscart_products_categories.category_id"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 8,
            "filtered": "5.00",
            "cost_info": {
              "read_cost": "43.00",
              "eval_cost": "0.86",
              "prefix_cost": "207.81",
              "data_read_per_join": "26K"
            },
            "used_columns": [
              "category_id",
              "storefront_id",
              "usergroup_ids",
              "status"
            ],
            "attached_condition": "((`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`storefront_id` in (0,1)) and ((`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids` = '') or (0 <> find_in_set(0,`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids`)) or (0 <> find_in_set(1,`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids`))) and (`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`status` in ('A','H')))"
          }
        }
      ]
    }
  }
}

Result

product_id category_ids position
3218 545,543,568,546,521,250,406,328,402,166,343M 0
3226 545,543,568,546,521,250,406,328,402,166,343M 0
3338 568,546,521,402,328,250,166,406,543,545,343M 0
3339 545,546,521,166,250,402,328,406,543,568,343M 0
3340 545,543,568,546,521,250,166,406,402,328,343M 0
3341 545,543,568,546,521,250,166,406,402,328,343M 0
3342 545,543,568,546,521,250,166,406,402,328,343M 0
3344 545,543,568,546,521,250,166,406,402,328,343M 0
3345 545,543,568,546,521,250,166,406,402,328,343M 0
3346 568,545,543,546,521,250,166,406,402,328,343M 0
3347 545,543,568,546,521,250,166,406,402,328,343M 0
5028 522,521,535M 0
5029 522,521,535M 0
5030 522,521,535M 0
5032 522,521,535M 0
5034 522,521,536M 0
5035 522,521,537M 0
5036 522,521,535M 0
5040 522,521,537M 0
5042 522,521,537M 0
5194 166,250,328,402,406,343,546,545,543,521,568M 0
5378 538,521,539M 0
5461 522,521,535M 0
5936 545,543,406,521,547,569,402,250,328,166,544M 0
5957 571,545,521,570,406,402,250,543,328,166,567M 0
6290 591M
6702 590M
6703 590M
6712 590M
6738 590M
6739 590M
6741 590M
6745 590M
6748 590M
6752 590M
6753 590M
6754 590M
8784 542,546,568,343M
8813 546,568,343M
10221 522M