SELECT 
  cscart_products_categories.product_id, 
  GROUP_CONCAT(
    IF(
      cscart_products_categories.link_type = "M", 
      CONCAT(
        cscart_products_categories.category_id, 
        "M"
      ), 
      cscart_products_categories.category_id
    )
  ) AS category_ids, 
  product_position_source.position AS position 
FROM 
  cscart_products_categories 
  INNER JOIN cscart_categories ON cscart_categories.category_id = cscart_products_categories.category_id 
  AND cscart_categories.storefront_id IN (0, 1) 
  AND (
    cscart_categories.usergroup_ids = '' 
    OR FIND_IN_SET(
      0, cscart_categories.usergroup_ids
    ) 
    OR FIND_IN_SET(
      1, cscart_categories.usergroup_ids
    )
  ) 
  AND cscart_categories.status IN ('A', 'H') 
  LEFT JOIN cscart_products_categories AS product_position_source ON cscart_products_categories.product_id = product_position_source.product_id 
  AND product_position_source.category_id = 250 
WHERE 
  cscart_products_categories.product_id IN (
    5468, 3496, 3507, 5011, 5394, 5248, 3330, 
    3510, 5193, 5373, 5375, 5014, 3499, 
    3931, 3471, 3960, 4473, 4806, 5396, 
    3492, 4204, 4263, 5021, 5209
  ) 
GROUP BY 
  cscart_products_categories.product_id

Query time 0.00262

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "98.39"
    },
    "grouping_operation": {
      "using_filesort": false,
      "nested_loop": [
        {
          "table": {
            "table_name": "cscart_products_categories",
            "access_type": "range",
            "possible_keys": [
              "PRIMARY",
              "pt"
            ],
            "key": "pt",
            "used_key_parts": [
              "product_id"
            ],
            "key_length": "3",
            "rows_examined_per_scan": 113,
            "rows_produced_per_join": 113,
            "filtered": "100.00",
            "index_condition": "(`softwarepirmam_hewadelivard_cscart_4`.`cscart_products_categories`.`product_id` in (5468,3496,3507,5011,5394,5248,3330,3510,5193,5373,5375,5014,3499,3931,3471,3960,4473,4806,5396,3492,4204,4263,5021,5209))",
            "cost_info": {
              "read_cost": "45.56",
              "eval_cost": "11.30",
              "prefix_cost": "56.86",
              "data_read_per_join": "1K"
            },
            "used_columns": [
              "product_id",
              "category_id",
              "link_type"
            ]
          }
        },
        {
          "table": {
            "table_name": "cscart_categories",
            "access_type": "eq_ref",
            "possible_keys": [
              "PRIMARY",
              "c_status",
              "p_category_id"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "category_id"
            ],
            "key_length": "3",
            "ref": [
              "softwarepirmam_hewadelivard_cscart_4.cscart_products_categories.category_id"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 5,
            "filtered": "5.00",
            "cost_info": {
              "read_cost": "28.25",
              "eval_cost": "0.57",
              "prefix_cost": "96.41",
              "data_read_per_join": "17K"
            },
            "used_columns": [
              "category_id",
              "storefront_id",
              "usergroup_ids",
              "status"
            ],
            "attached_condition": "((`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`storefront_id` in (0,1)) and ((`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids` = '') or (0 <> find_in_set(0,`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids`)) or (0 <> find_in_set(1,`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids`))) and (`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`status` in ('A','H')))"
          }
        },
        {
          "table": {
            "table_name": "product_position_source",
            "access_type": "eq_ref",
            "possible_keys": [
              "PRIMARY",
              "pt"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "category_id",
              "product_id"
            ],
            "key_length": "6",
            "ref": [
              "const",
              "softwarepirmam_hewadelivard_cscart_4.cscart_products_categories.product_id"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 5,
            "filtered": "100.00",
            "cost_info": {
              "read_cost": "1.41",
              "eval_cost": "0.57",
              "prefix_cost": "98.39",
              "data_read_per_join": "90"
            },
            "used_columns": [
              "product_id",
              "category_id",
              "position"
            ]
          }
        }
      ]
    }
  }
}

Result

product_id category_ids position
3330 371,250,394M 0
3471 250,371,393M 0
3492 250,371,393M 0
3496 250,371,393M 0
3499 458,250,488M 0
3507 489,250,371M 0
3510 250,371,393M 0
3931 404,328,402,250,166,341M 0
3960 404,328,402,250,166,341M 0
4204 308,250,381,350,166,385M 0
4263 386,308,250,350,166,382M 0
4473 380,250,520,423,166M 0
4806 166,402,250,328,565,564M 0
5011 561,555,557,552,553,372,250,563M 0
5014 561,555,557,552,553,372,250,563M 0
5021 561,555,557,552,553,372,250,563M 0
5193 166,402,328,250,564,565M 0
5209 328,402,407,359,412,166,250,360M 0
5248 166,250,328,402,359,360,407,412M 0
5373 360,407,402,250,359,328,166,412M 0
5375 250,372,556,553,552,554M 0
5394 250,372,553,554,552,556M 0
5396 372,250,553,554,552,556M 0
5468 250,372,556,553,552,554M 0