SELECT 
  cscart_products_categories.product_id, 
  GROUP_CONCAT(
    IF(
      cscart_products_categories.link_type = "M", 
      CONCAT(
        cscart_products_categories.category_id, 
        "M"
      ), 
      cscart_products_categories.category_id
    )
  ) AS category_ids, 
  product_position_source.position AS position 
FROM 
  cscart_products_categories 
  INNER JOIN cscart_categories ON cscart_categories.category_id = cscart_products_categories.category_id 
  AND cscart_categories.storefront_id IN (0, 1) 
  AND (
    cscart_categories.usergroup_ids = '' 
    OR FIND_IN_SET(
      0, cscart_categories.usergroup_ids
    ) 
    OR FIND_IN_SET(
      1, cscart_categories.usergroup_ids
    )
  ) 
  AND cscart_categories.status IN ('A', 'H') 
  LEFT JOIN cscart_products_categories AS product_position_source ON cscart_products_categories.product_id = product_position_source.product_id 
  AND product_position_source.category_id = 250 
WHERE 
  cscart_products_categories.product_id IN (
    4828, 5550, 5677, 5004, 3937, 3963, 3986, 
    5020, 4471, 5249, 5857, 5943, 4291, 
    3957, 4832, 5561, 4002, 5388, 5862, 
    6369, 6113, 5541, 4478, 5198
  ) 
GROUP BY 
  cscart_products_categories.product_id

Query time 0.00243

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "99.20"
    },
    "grouping_operation": {
      "using_filesort": false,
      "nested_loop": [
        {
          "table": {
            "table_name": "cscart_products_categories",
            "access_type": "range",
            "possible_keys": [
              "PRIMARY",
              "pt"
            ],
            "key": "pt",
            "used_key_parts": [
              "product_id"
            ],
            "key_length": "3",
            "rows_examined_per_scan": 114,
            "rows_produced_per_join": 114,
            "filtered": "100.00",
            "index_condition": "(`softwarepirmam_hewadelivard_cscart_4`.`cscart_products_categories`.`product_id` in (4828,5550,5677,5004,3937,3963,3986,5020,4471,5249,5857,5943,4291,3957,4832,5561,4002,5388,5862,6369,6113,5541,4478,5198))",
            "cost_info": {
              "read_cost": "45.91",
              "eval_cost": "11.40",
              "prefix_cost": "57.31",
              "data_read_per_join": "1K"
            },
            "used_columns": [
              "product_id",
              "category_id",
              "link_type"
            ]
          }
        },
        {
          "table": {
            "table_name": "cscart_categories",
            "access_type": "eq_ref",
            "possible_keys": [
              "PRIMARY",
              "c_status",
              "p_category_id"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "category_id"
            ],
            "key_length": "3",
            "ref": [
              "softwarepirmam_hewadelivard_cscart_4.cscart_products_categories.category_id"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 5,
            "filtered": "5.00",
            "cost_info": {
              "read_cost": "28.50",
              "eval_cost": "0.57",
              "prefix_cost": "97.21",
              "data_read_per_join": "17K"
            },
            "used_columns": [
              "category_id",
              "storefront_id",
              "usergroup_ids",
              "status"
            ],
            "attached_condition": "((`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`storefront_id` in (0,1)) and ((`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids` = '') or (0 <> find_in_set(0,`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids`)) or (0 <> find_in_set(1,`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids`))) and (`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`status` in ('A','H')))"
          }
        },
        {
          "table": {
            "table_name": "product_position_source",
            "access_type": "eq_ref",
            "possible_keys": [
              "PRIMARY",
              "pt"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "category_id",
              "product_id"
            ],
            "key_length": "6",
            "ref": [
              "const",
              "softwarepirmam_hewadelivard_cscart_4.cscart_products_categories.product_id"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 5,
            "filtered": "100.00",
            "cost_info": {
              "read_cost": "1.43",
              "eval_cost": "0.57",
              "prefix_cost": "99.21",
              "data_read_per_join": "91"
            },
            "used_columns": [
              "product_id",
              "category_id",
              "position"
            ]
          }
        }
      ]
    }
  }
}

Result

product_id category_ids position
3937 351,250,166,401,446M 0
3957 341,328,402,250,166,404M 0
3963 341,328,402,250,166,404M 0
3986 250,166,351,401,446M 0
4002 341,328,402,250,166,404M 0
4291 383,308,250,350,166,387M 0
4471 387,308,250,350,166,383M 0
4478 385,308,250,350,166,381M 0
4828 166,250,328,402,565,564M 0
4832 166,402,250,328,565,564M 0
5004 561,555,557,552,553,372,250,563M 0
5020 561,555,557,552,553,372,250,563M 0
5198 166,250,328,402,404,341M 0
5249 402,328,404,166,250,341M 0
5388 372,250,553,554,552,556M 0
5541 554,556M
5550 554,553,552,250,372,556M 0
5561 250,372,552,560,557,553,555,562M 0
5677 553,555,250,560,557,552,372,562M 0
5857 308,250,350,166,387,383M 0
5862 423,308,387,250,350,166,383M 0
5943 565,402,250,328,166,564M 0
6113 350,166,308,387,250,383M 0
6369 395M