SELECT 
  cscart_products_categories.product_id, 
  GROUP_CONCAT(
    IF(
      cscart_products_categories.link_type = "M", 
      CONCAT(
        cscart_products_categories.category_id, 
        "M"
      ), 
      cscart_products_categories.category_id
    )
  ) AS category_ids, 
  product_position_source.position AS position 
FROM 
  cscart_products_categories 
  INNER JOIN cscart_categories ON cscart_categories.category_id = cscart_products_categories.category_id 
  AND cscart_categories.storefront_id IN (0, 1) 
  AND (
    cscart_categories.usergroup_ids = '' 
    OR FIND_IN_SET(
      0, cscart_categories.usergroup_ids
    ) 
    OR FIND_IN_SET(
      1, cscart_categories.usergroup_ids
    )
  ) 
  AND cscart_categories.status IN ('A', 'H') 
  LEFT JOIN cscart_products_categories AS product_position_source ON cscart_products_categories.product_id = product_position_source.product_id 
  AND product_position_source.category_id = 250 
WHERE 
  cscart_products_categories.product_id IN (
    5189, 5246, 7991, 5184, 5960, 5115, 5178, 
    5181, 5473, 6773, 5672, 5823, 5546, 
    5214, 5391, 5389, 5398, 5469, 5959, 
    5646, 5252, 5543, 5183, 5470
  ) 
GROUP BY 
  cscart_products_categories.product_id

Query time 0.00365

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "115.55"
    },
    "grouping_operation": {
      "using_filesort": false,
      "nested_loop": [
        {
          "table": {
            "table_name": "cscart_products_categories",
            "access_type": "range",
            "possible_keys": [
              "PRIMARY",
              "pt"
            ],
            "key": "pt",
            "used_key_parts": [
              "product_id"
            ],
            "key_length": "3",
            "rows_examined_per_scan": 134,
            "rows_produced_per_join": 134,
            "filtered": "100.00",
            "index_condition": "(`softwarepirmam_hewadelivard_cscart_4`.`cscart_products_categories`.`product_id` in (5189,5246,7991,5184,5960,5115,5178,5181,5473,6773,5672,5823,5546,5214,5391,5389,5398,5469,5959,5646,5252,5543,5183,5470))",
            "cost_info": {
              "read_cost": "52.91",
              "eval_cost": "13.40",
              "prefix_cost": "66.31",
              "data_read_per_join": "2K"
            },
            "used_columns": [
              "product_id",
              "category_id",
              "link_type"
            ]
          }
        },
        {
          "table": {
            "table_name": "cscart_categories",
            "access_type": "eq_ref",
            "possible_keys": [
              "PRIMARY",
              "c_status",
              "p_category_id"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "category_id"
            ],
            "key_length": "3",
            "ref": [
              "softwarepirmam_hewadelivard_cscart_4.cscart_products_categories.category_id"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 6,
            "filtered": "5.00",
            "cost_info": {
              "read_cost": "33.50",
              "eval_cost": "0.67",
              "prefix_cost": "113.21",
              "data_read_per_join": "20K"
            },
            "used_columns": [
              "category_id",
              "storefront_id",
              "usergroup_ids",
              "status"
            ],
            "attached_condition": "((`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`storefront_id` in (0,1)) and ((`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids` = '') or (0 <> find_in_set(0,`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids`)) or (0 <> find_in_set(1,`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids`))) and (`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`status` in ('A','H')))"
          }
        },
        {
          "table": {
            "table_name": "product_position_source",
            "access_type": "eq_ref",
            "possible_keys": [
              "PRIMARY",
              "pt"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "category_id",
              "product_id"
            ],
            "key_length": "6",
            "ref": [
              "const",
              "softwarepirmam_hewadelivard_cscart_4.cscart_products_categories.product_id"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 6,
            "filtered": "100.00",
            "cost_info": {
              "read_cost": "1.68",
              "eval_cost": "0.67",
              "prefix_cost": "115.56",
              "data_read_per_join": "107"
            },
            "used_columns": [
              "product_id",
              "category_id",
              "position"
            ]
          }
        }
      ]
    }
  }
}

Result

product_id category_ids position
5115 250,372,557,555,562,553,552,560M 0
5178 555,250,372,553,552,557,563,561M 0
5181 250,372,557,555,562,553,552,560M 0
5183 563,557,555,250,372,553,552,561M 0
5184 563,250,555,557,552,553,372,561M 0
5189 250,372,557,555,553,560,552,562M 0
5214 328,402,407,359,360,166,250,412M 0
5246 407,359,328,402,361,166,250,413M 0
5252 328,402,405,342,362,166,250,410M 0
5389 372,250,554,552,553,556M 0
5391 250,372,554,553,552,556M 0
5398 250,372,554,553,552,556M 0
5469 552,250,372,556,553,554M 0
5470 250,372,556,553,552,554M 0
5473 554,553,250,552,372,556M 0
5543 553,250,552,554,372,556M 0
5546 553,250,552,554,372,556M 0
5646 553,555,250,560,557,552,372,562M 0
5672 555,553,250,560,557,552,372,562M 0
5823 404,402,250,328,166,341M 0
5959 565,413,407,402,250,359,328,166,564,361M 0
5960 404,402,250,328,166,341M 0
6773 554,556M
7991 395M