SELECT 
  SQL_CALC_FOUND_ROWS products.product_id, 
  descr1.product as product, 
  companies.company as company_name, 
  products.product_type, 
  products.parent_product_id 
FROM 
  cscart_products as products 
  LEFT JOIN cscart_product_descriptions as descr1 ON descr1.product_id = products.product_id 
  AND descr1.lang_code = 'en' 
  LEFT JOIN cscart_product_prices as prices ON prices.product_id = products.product_id 
  AND prices.lower_limit = 1 
  LEFT JOIN cscart_companies AS companies ON companies.company_id = products.company_id 
  INNER JOIN cscart_products_categories as products_categories ON products_categories.product_id = products.product_id 
  INNER JOIN cscart_categories ON cscart_categories.category_id = products_categories.category_id 
  AND (
    cscart_categories.usergroup_ids = '' 
    OR FIND_IN_SET(
      0, cscart_categories.usergroup_ids
    ) 
    OR FIND_IN_SET(
      1, cscart_categories.usergroup_ids
    )
  ) 
  AND cscart_categories.status IN ('A', 'H') 
  AND cscart_categories.storefront_id IN (0, 1) 
  LEFT JOIN cscart_product_popularity as popularity ON popularity.product_id = products.product_id 
WHERE 
  1 
  AND companies.status IN ('A') 
  AND products.company_id = 1 
  AND (
    products.amount > 0 
    OR products.tracking = 'D'
  ) 
  AND (
    products.usergroup_ids = '' 
    OR FIND_IN_SET(0, products.usergroup_ids) 
    OR FIND_IN_SET(1, products.usergroup_ids)
  ) 
  AND products.status IN ('A') 
  AND prices.usergroup_id IN (0, 0, 1) 
  AND products.company_id = 1 
  AND products.parent_product_id = 0 
  AND products.product_type != 'D' 
GROUP BY 
  products.product_id 
ORDER BY 
  popularity.total desc, 
  products.product_id ASC 
LIMIT 
  5400, 24

Query time 0.21169

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "855.25"
    },
    "ordering_operation": {
      "using_filesort": true,
      "grouping_operation": {
        "using_temporary_table": true,
        "using_filesort": false,
        "nested_loop": [
          {
            "table": {
              "table_name": "companies",
              "access_type": "const",
              "possible_keys": [
                "PRIMARY"
              ],
              "key": "PRIMARY",
              "used_key_parts": [
                "company_id"
              ],
              "key_length": "4",
              "ref": [
                "const"
              ],
              "rows_examined_per_scan": 1,
              "rows_produced_per_join": 1,
              "filtered": "100.00",
              "cost_info": {
                "read_cost": "0.00",
                "eval_cost": "0.10",
                "prefix_cost": "0.00",
                "data_read_per_join": "6K"
              },
              "used_columns": [
                "company_id",
                "status",
                "company"
              ]
            }
          },
          {
            "table": {
              "table_name": "products",
              "access_type": "ref",
              "possible_keys": [
                "PRIMARY",
                "status",
                "idx_parent_product_id"
              ],
              "key": "status",
              "used_key_parts": [
                "status"
              ],
              "key_length": "3",
              "ref": [
                "const"
              ],
              "rows_examined_per_scan": 4304,
              "rows_produced_per_join": 84,
              "filtered": "1.95",
              "cost_info": {
                "read_cost": "218.70",
                "eval_cost": "8.41",
                "prefix_cost": "649.10",
                "data_read_per_join": "371K"
              },
              "used_columns": [
                "product_id",
                "product_type",
                "status",
                "company_id",
                "amount",
                "usergroup_ids",
                "tracking",
                "parent_product_id"
              ],
              "attached_condition": "((`softwarepirmam_hewadelivard_cscart_4`.`products`.`parent_product_id` = 0) and (`softwarepirmam_hewadelivard_cscart_4`.`products`.`company_id` = 1) and ((`softwarepirmam_hewadelivard_cscart_4`.`products`.`amount` > 0) or (`softwarepirmam_hewadelivard_cscart_4`.`products`.`tracking` = 'D')) and ((`softwarepirmam_hewadelivard_cscart_4`.`products`.`usergroup_ids` = '') or (0 <> find_in_set(0,`softwarepirmam_hewadelivard_cscart_4`.`products`.`usergroup_ids`)) or (0 <> find_in_set(1,`softwarepirmam_hewadelivard_cscart_4`.`products`.`usergroup_ids`))) and (`softwarepirmam_hewadelivard_cscart_4`.`products`.`product_type` <> 'D'))"
            }
          },
          {
            "table": {
              "table_name": "prices",
              "access_type": "ref",
              "possible_keys": [
                "usergroup",
                "product_id",
                "lower_limit",
                "usergroup_id"
              ],
              "key": "product_id",
              "used_key_parts": [
                "product_id"
              ],
              "key_length": "3",
              "ref": [
                "softwarepirmam_hewadelivard_cscart_4.products.product_id"
              ],
              "rows_examined_per_scan": 1,
              "rows_produced_per_join": 83,
              "filtered": "99.93",
              "cost_info": {
                "read_cost": "21.01",
                "eval_cost": "8.40",
                "prefix_cost": "678.52",
                "data_read_per_join": "1K"
              },
              "used_columns": [
                "product_id",
                "lower_limit",
                "usergroup_id"
              ],
              "attached_condition": "((`softwarepirmam_hewadelivard_cscart_4`.`prices`.`lower_limit` = 1) and (`softwarepirmam_hewadelivard_cscart_4`.`prices`.`usergroup_id` in (0,0,1)))"
            }
          },
          {
            "table": {
              "table_name": "popularity",
              "access_type": "eq_ref",
              "possible_keys": [
                "PRIMARY",
                "total"
              ],
              "key": "PRIMARY",
              "used_key_parts": [
                "product_id"
              ],
              "key_length": "3",
              "ref": [
                "softwarepirmam_hewadelivard_cscart_4.products.product_id"
              ],
              "rows_examined_per_scan": 1,
              "rows_produced_per_join": 83,
              "filtered": "100.00",
              "cost_info": {
                "read_cost": "21.00",
                "eval_cost": "8.40",
                "prefix_cost": "707.92",
                "data_read_per_join": "2K"
              },
              "used_columns": [
                "product_id",
                "total"
              ]
            }
          },
          {
            "table": {
              "table_name": "descr1",
              "access_type": "eq_ref",
              "possible_keys": [
                "PRIMARY",
                "product_id"
              ],
              "key": "PRIMARY",
              "used_key_parts": [
                "product_id",
                "lang_code"
              ],
              "key_length": "9",
              "ref": [
                "softwarepirmam_hewadelivard_cscart_4.products.product_id",
                "const"
              ],
              "rows_examined_per_scan": 1,
              "rows_produced_per_join": 83,
              "filtered": "100.00",
              "cost_info": {
                "read_cost": "21.33",
                "eval_cost": "8.40",
                "prefix_cost": "737.65",
                "data_read_per_join": "383K"
              },
              "used_columns": [
                "product_id",
                "lang_code",
                "product"
              ]
            }
          },
          {
            "table": {
              "table_name": "products_categories",
              "access_type": "ref",
              "possible_keys": [
                "PRIMARY",
                "pt"
              ],
              "key": "pt",
              "used_key_parts": [
                "product_id"
              ],
              "key_length": "3",
              "ref": [
                "softwarepirmam_hewadelivard_cscart_4.products.product_id"
              ],
              "rows_examined_per_scan": 2,
              "rows_produced_per_join": 167,
              "filtered": "100.00",
              "cost_info": {
                "read_cost": "42.00",
                "eval_cost": "16.80",
                "prefix_cost": "796.45",
                "data_read_per_join": "2K"
              },
              "used_columns": [
                "product_id",
                "category_id"
              ]
            }
          },
          {
            "table": {
              "table_name": "cscart_categories",
              "access_type": "eq_ref",
              "possible_keys": [
                "PRIMARY",
                "c_status",
                "p_category_id"
              ],
              "key": "PRIMARY",
              "used_key_parts": [
                "category_id"
              ],
              "key_length": "3",
              "ref": [
                "softwarepirmam_hewadelivard_cscart_4.products_categories.category_id"
              ],
              "rows_examined_per_scan": 1,
              "rows_produced_per_join": 8,
              "filtered": "5.00",
              "cost_info": {
                "read_cost": "42.00",
                "eval_cost": "0.84",
                "prefix_cost": "855.25",
                "data_read_per_join": "26K"
              },
              "used_columns": [
                "category_id",
                "storefront_id",
                "usergroup_ids",
                "status"
              ],
              "attached_condition": "(((`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids` = '') or (0 <> find_in_set(0,`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids`)) or (0 <> find_in_set(1,`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids`))) and (`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`status` in ('A','H')) and (`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`storefront_id` in (0,1)))"
            }
          }
        ]
      }
    }
  }
}

Result

product_id product company_name product_type parent_product_id
9355 Bath & Body Works Aroma Orange & Ginger Body Lotion Delivard Store P 0
9356 Bath & Body Works Aroma Mindful Pause Vetiver & Vanilla Body Lotion Delivard Store P 0
9358 Bath & Body Works Aroma Lavender & Iris Body Lotion Delivard Store P 0
9362 Bath & Body Works A Thousand Wishes Body Lotion Delivard Store P 0
9363 THE BODY SHOP WHITE MUSK BODY LOTION Delivard Store P 0
9367 THE BODY SHOP ALMOND MILK BODY YOGURT Delivard Store P 0
9369 Correction Whitening Roll-On Deodorant Pink Delivard Store P 0
9377 Davidoff Zino Deodorant Stick Delivard Store P 0
9378 Vichy 48 Hours Anti Perspirant Deodorant Intensive Treatment Delivard Store P 0
9383 SLAZENGER GYM DEODORANT FOR MEN - GREEN Delivard Store P 0
9388 Prophecy Regular – Perfume Body Deodorant for Women Delivard Store P 0
9390 Mercedes-Benz Sign Deostick Delivard Store P 0
9393 Mercedes AMG Red Thrill Deodorant Stick Delivard Store P 0
9394 Mercedes AMG Black Thrill Deodorant Stick Delivard Store P 0
9403 Hamlet Chromium – Deodorant Spray for Men Delivard Store P 0
9404 Hamlet Black – Deodorant Spray for Men Delivard Store P 0
9406 Franck Olivier Oud Touch Deodorant Spray Delivard Store P 0
9412 Brummel Black – Deodorant Spray for Men Delivard Store P 0
9416 Beesline Whitening Roll-On Deodorant – Cotton Candy Delivard Store P 0
9417 Beesline Whitening Roll-On Deodorant – Zero Aluminum Silver Power (Fragrance-Free) Delivard Store P 0
9418 Beesline Radiant Bright Underarm Serum – Silky Touch Delivard Store P 0
9469 Beesline Instant White Whitening Roll-On Deodorant Delivard Store P 0
9472 Azzaro Pour Homme Deodorant Spray Delivard Store P 0
9529 Mercedes For Men Intense All Over Body Spray Delivard Store P 0