SELECT 
  cscart_products_categories.product_id, 
  GROUP_CONCAT(
    IF(
      cscart_products_categories.link_type = "M", 
      CONCAT(
        cscart_products_categories.category_id, 
        "M"
      ), 
      cscart_products_categories.category_id
    )
  ) AS category_ids 
FROM 
  cscart_products_categories 
  INNER JOIN cscart_categories ON cscart_categories.category_id = cscart_products_categories.category_id 
  AND cscart_categories.storefront_id IN (0, 1) 
  AND (
    cscart_categories.usergroup_ids = '' 
    OR FIND_IN_SET(
      0, cscart_categories.usergroup_ids
    ) 
    OR FIND_IN_SET(
      1, cscart_categories.usergroup_ids
    )
  ) 
  AND cscart_categories.status IN ('A', 'H') 
WHERE 
  cscart_products_categories.product_id IN (
    5346, 5387, 5309, 5386, 5370, 5369, 5371, 
    5392, 5390, 5372, 11255, 11277, 10956, 
    11280, 11456, 11118, 11131, 10954, 
    11074, 11222, 11102, 11112, 11069, 
    11099, 10955, 11119, 11120, 11311, 
    11057, 11058, 11076, 11091, 11253, 
    11312, 11059, 11098, 11113, 11262, 
    11283, 11314, 11329, 11010, 11012, 
    11060, 11062, 11115, 10961, 11079, 
    11092, 11116, 11285, 11002, 11061, 
    11063, 11066, 11078, 11095, 11097, 
    11114, 11221, 11286, 11379, 11103, 
    11290
  ) 
GROUP BY 
  cscart_products_categories.product_id

Query time 0.00221

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "186.41"
    },
    "grouping_operation": {
      "using_filesort": false,
      "nested_loop": [
        {
          "table": {
            "table_name": "cscart_products_categories",
            "access_type": "range",
            "possible_keys": [
              "PRIMARY",
              "pt"
            ],
            "key": "pt",
            "used_key_parts": [
              "product_id"
            ],
            "key_length": "3",
            "rows_examined_per_scan": 213,
            "rows_produced_per_join": 213,
            "filtered": "100.00",
            "index_condition": "(`softwarepirmam_hewadelivard_cscart_4`.`cscart_products_categories`.`product_id` in (5346,5387,5309,5386,5370,5369,5371,5392,5390,5372,11255,11277,10956,11280,11456,11118,11131,10954,11074,11222,11102,11112,11069,11099,10955,11119,11120,11311,11057,11058,11076,11091,11253,11312,11059,11098,11113,11262,11283,11314,11329,11010,11012,11060,11062,11115,10961,11079,11092,11116,11285,11002,11061,11063,11066,11078,11095,11097,11114,11221,11286,11379,11103,11290))",
            "cost_info": {
              "read_cost": "90.56",
              "eval_cost": "21.30",
              "prefix_cost": "111.86",
              "data_read_per_join": "3K"
            },
            "used_columns": [
              "product_id",
              "category_id",
              "link_type"
            ]
          }
        },
        {
          "table": {
            "table_name": "cscart_categories",
            "access_type": "eq_ref",
            "possible_keys": [
              "PRIMARY",
              "c_status",
              "p_category_id"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "category_id"
            ],
            "key_length": "3",
            "ref": [
              "softwarepirmam_hewadelivard_cscart_4.cscart_products_categories.category_id"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 10,
            "filtered": "5.00",
            "cost_info": {
              "read_cost": "53.25",
              "eval_cost": "1.07",
              "prefix_cost": "186.41",
              "data_read_per_join": "33K"
            },
            "used_columns": [
              "category_id",
              "storefront_id",
              "usergroup_ids",
              "status"
            ],
            "attached_condition": "((`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`storefront_id` in (0,1)) and ((`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids` = '') or (0 <> find_in_set(0,`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids`)) or (0 <> find_in_set(1,`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids`))) and (`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`status` in ('A','H')))"
          }
        }
      ]
    }
  }
}

Result

product_id category_ids
5309 554,553,250,372,552,556M
5346 554,553,250,372,552,556M
5369 554,553,250,372,552,556M
5370 250,556,552,553,372,554M
5371 554,553,250,372,552,556M
5372 250,554,553,552,372,556M
5386 554,553,250,552,372,556M
5387 554,553,250,552,372,556M
5390 554,553,250,552,372,556M
5392 554,553,250,552,372,556M
10954 560,562M
10955 666,667M
10956 667,666M
10961 552,553M
11002 553,552M
11010 562,560M
11012 562,560M
11057 560,562M
11058 668M
11059 666,667M
11060 667,666M
11061 668M
11062 667,666M
11063 667,666M
11066 667,666M
11069 668M
11074 668M
11076 667,666M
11078 667,666M
11079 667,666M
11091 597M
11092 667,666M
11095 668M
11097 668M
11098 556,554M
11099 668M
11102 554,556M
11103 668M
11112 554,556M
11113 667,666M
11114 667,666M
11115 667,666M
11116 667,666M
11118 573M
11119 575M
11120 556,554M
11131 573M
11221 467M
11222 556,554M
11253 597M
11255 556,554M
11262 554,556M
11277 556,554M
11280 556,554M
11283 556,554M
11285 556,554M
11286 556,554M
11290 556,554M
11311 554,556M
11312 554,556M
11314 556,554M
11329 579M
11379 579M
11456 599M