SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    10594, 10599, 10614, 10616, 10617, 10626, 
    10641, 10643, 10645, 10651, 10655, 
    10683, 10684, 10697, 10698, 10969, 
    10971, 10985, 10998, 11001, 11007, 
    11042, 11051, 11053
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00125

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "33.61"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "usergroup",
        "used_key_parts": [
          "product_id",
          "usergroup_id",
          "lower_limit"
        ],
        "key_length": "9",
        "rows_examined_per_scan": 48,
        "rows_produced_per_join": 48,
        "filtered": "100.00",
        "index_condition": "((`softwarepirmam_hewadelivard_cscart_4`.`cscart_product_prices`.`lower_limit` = 1) and (`softwarepirmam_hewadelivard_cscart_4`.`cscart_product_prices`.`product_id` in (10594,10599,10614,10616,10617,10626,10641,10643,10645,10651,10655,10683,10684,10697,10698,10969,10971,10985,10998,11001,11007,11042,11051,11053)) and (`softwarepirmam_hewadelivard_cscart_4`.`cscart_product_prices`.`usergroup_id` in (0,1)))",
        "cost_info": {
          "read_cost": "28.81",
          "eval_cost": "4.80",
          "prefix_cost": "33.61",
          "data_read_per_join": "1K"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ]
      }
    }
  }
}

Result

product_id price
10594 40250.00000000
10599 40500.00000000
10614 42000.00000000
10616 42000.00000000
10617 42000.00000000
10626 40500.00000000
10641 40500.00000000
10643 40500.00000000
10645 40500.00000000
10651 46500.00000000
10655 56000.00000000
10683 40000.00000000
10684 40500.00000000
10697 31000.00000000
10698 31000.00000000
10969 1960000.00000000
10971 135000.00000000
10985 45000.00000000
10998 95000.00000000
11001 100000.00000000
11007 115000.00000000
11042 265000.00000000
11051 38000.00000000
11053 100000.00000000