SELECT 
  cscart_products_categories.product_id, 
  GROUP_CONCAT(
    IF(
      cscart_products_categories.link_type = "M", 
      CONCAT(
        cscart_products_categories.category_id, 
        "M"
      ), 
      cscart_products_categories.category_id
    )
  ) AS category_ids, 
  product_position_source.position AS position 
FROM 
  cscart_products_categories 
  INNER JOIN cscart_categories ON cscart_categories.category_id = cscart_products_categories.category_id 
  AND cscart_categories.storefront_id IN (0, 1) 
  AND (
    cscart_categories.usergroup_ids = '' 
    OR FIND_IN_SET(
      0, cscart_categories.usergroup_ids
    ) 
    OR FIND_IN_SET(
      1, cscart_categories.usergroup_ids
    )
  ) 
  AND cscart_categories.status IN ('A', 'H') 
  LEFT JOIN cscart_products_categories AS product_position_source ON cscart_products_categories.product_id = product_position_source.product_id 
  AND product_position_source.category_id = 250 
WHERE 
  cscart_products_categories.product_id IN (
    5564, 4831, 5119, 5120, 5195, 5544, 5016, 
    4818, 5676, 5808, 5247, 5555, 5580, 
    5371, 4135, 5575, 5392, 6368, 5573, 
    5915, 5540, 5466, 4755, 5570
  ) 
GROUP BY 
  cscart_products_categories.product_id

Query time 0.00226

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "119.64"
    },
    "grouping_operation": {
      "using_filesort": false,
      "nested_loop": [
        {
          "table": {
            "table_name": "cscart_products_categories",
            "access_type": "range",
            "possible_keys": [
              "PRIMARY",
              "pt"
            ],
            "key": "pt",
            "used_key_parts": [
              "product_id"
            ],
            "key_length": "3",
            "rows_examined_per_scan": 139,
            "rows_produced_per_join": 139,
            "filtered": "100.00",
            "index_condition": "(`softwarepirmam_hewadelivard_cscart_4`.`cscart_products_categories`.`product_id` in (5564,4831,5119,5120,5195,5544,5016,4818,5676,5808,5247,5555,5580,5371,4135,5575,5392,6368,5573,5915,5540,5466,4755,5570))",
            "cost_info": {
              "read_cost": "54.66",
              "eval_cost": "13.90",
              "prefix_cost": "68.56",
              "data_read_per_join": "2K"
            },
            "used_columns": [
              "product_id",
              "category_id",
              "link_type"
            ]
          }
        },
        {
          "table": {
            "table_name": "cscart_categories",
            "access_type": "eq_ref",
            "possible_keys": [
              "PRIMARY",
              "c_status",
              "p_category_id"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "category_id"
            ],
            "key_length": "3",
            "ref": [
              "softwarepirmam_hewadelivard_cscart_4.cscart_products_categories.category_id"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 6,
            "filtered": "5.00",
            "cost_info": {
              "read_cost": "34.75",
              "eval_cost": "0.70",
              "prefix_cost": "117.21",
              "data_read_per_join": "21K"
            },
            "used_columns": [
              "category_id",
              "storefront_id",
              "usergroup_ids",
              "status"
            ],
            "attached_condition": "((`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`storefront_id` in (0,1)) and ((`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids` = '') or (0 <> find_in_set(0,`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids`)) or (0 <> find_in_set(1,`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`usergroup_ids`))) and (`softwarepirmam_hewadelivard_cscart_4`.`cscart_categories`.`status` in ('A','H')))"
          }
        },
        {
          "table": {
            "table_name": "product_position_source",
            "access_type": "eq_ref",
            "possible_keys": [
              "PRIMARY",
              "pt"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "category_id",
              "product_id"
            ],
            "key_length": "6",
            "ref": [
              "const",
              "softwarepirmam_hewadelivard_cscart_4.cscart_products_categories.product_id"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 6,
            "filtered": "100.00",
            "cost_info": {
              "read_cost": "1.74",
              "eval_cost": "0.70",
              "prefix_cost": "119.64",
              "data_read_per_join": "111"
            },
            "used_columns": [
              "product_id",
              "category_id",
              "position"
            ]
          }
        }
      ]
    }
  }
}

Result

product_id category_ids position
4135 381,308,250,350,166,385M 0
4755 166,405,402,250,342,328,362,410M 0
4818 166,402,406,543,545,250,328,567,570,571M 0
4831 166,402,250,328,565,564M 0
5016 561,555,557,552,553,372,250,563M 0
5119 250,372,562,553,552,557,555,560M 0
5120 557,555,372,250,562,553,552,560M 0
5195 166,250,521,402,328,343,546,406,545,543,568M 0
5247 328,402,407,359,361,166,250,413M 0
5371 554,553,250,372,552,556M 0
5392 554,553,250,552,372,556M 0
5466 250,372,553,552,554,556M 0
5540 250,372,560,553,555,552,557,562M 0
5544 553,250,552,554,372,556M 0
5555 554,553,250,552,372,556M 0
5564 554,553,250,552,372,556M 0
5570 555,553,250,560,557,552,372,562M 0
5573 562,250,555,553,557,552,372,560M 0
5575 553,560,250,555,557,552,372,562M 0
5580 553,555,250,562,557,552,372,560M 0
5676 553,555,250,560,557,552,372,562M 0
5808 308,387,250,350,166,383M 0
5915 404,402,250,328,166,341M 0
6368 615M