SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    8468, 8515, 8531, 8533, 8542, 8616, 8698, 
    8707, 8386, 8404, 8449, 8522, 8591, 
    8592, 8598, 8786, 8808
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00164

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "11.91"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 17,
        "rows_produced_per_join": 3,
        "filtered": "19.99",
        "index_condition": "(`softwarepirmam_hewadelivard_cscart_4`.`cscart_product_prices`.`product_id` in (8468,8515,8531,8533,8542,8616,8698,8707,8386,8404,8449,8522,8591,8592,8598,8786,8808))",
        "cost_info": {
          "read_cost": "11.57",
          "eval_cost": "0.34",
          "prefix_cost": "11.91",
          "data_read_per_join": "81"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`softwarepirmam_hewadelivard_cscart_4`.`cscart_product_prices`.`lower_limit` = 1) and (`softwarepirmam_hewadelivard_cscart_4`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
8386 18000.00000000
8404 59000.00000000
8449 15000.00000000
8468 13000.00000000
8515 29000.00000000
8522 24000.00000000
8531 59000.00000000
8533 14000.00000000
8542 19000.00000000
8591 17000.00000000
8592 26000.00000000
8598 68000.00000000
8616 69000.00000000
8698 89000.00000000
8707 9000.00000000
8786 21000.00000000
8808 29000.00000000